Package htsjdk.tribble.util
Class TabixUtils
- java.lang.Object
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- htsjdk.tribble.util.TabixUtils
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public class TabixUtils extends Object
classes that have anything to do with tabix
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Nested Class Summary
Nested Classes Modifier and Type Class Description static class
TabixUtils.TIndex
static class
TabixUtils.TIntv
static class
TabixUtils.TPair64
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Field Summary
Fields Modifier and Type Field Description static String
STANDARD_INDEX_EXTENSION
Deprecated.Use since June 2019FileExtensions.TABIX_INDEX
instead.
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Constructor Summary
Constructors Constructor Description TabixUtils()
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Method Summary
All Methods Static Methods Concrete Methods Modifier and Type Method Description static SAMSequenceDictionary
getSequenceDictionary(File tabixIndex)
Generates the SAMSequenceDictionary from the given tabix index filestatic boolean
less64(long u, long v)
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Field Detail
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STANDARD_INDEX_EXTENSION
@Deprecated public static final String STANDARD_INDEX_EXTENSION
Deprecated.Use since June 2019FileExtensions.TABIX_INDEX
instead.- See Also:
- Constant Field Values
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Method Detail
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less64
public static boolean less64(long u, long v)
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getSequenceDictionary
public static SAMSequenceDictionary getSequenceDictionary(File tabixIndex)
Generates the SAMSequenceDictionary from the given tabix index file- Parameters:
tabixIndex
- the tabix index file- Returns:
- non-null sequence dictionary
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