Class AlignedFilter

    • Constructor Detail

      • AlignedFilter

        public AlignedFilter​(boolean includeAligned)
    • Method Detail

      • filterOut

        public boolean filterOut​(SAMRecord record)
        Determines whether a SAMRecord matches this filter
        Specified by:
        filterOut in interface SamRecordFilter
        Parameters:
        record - the SAMRecord to evaluate
        Returns:
        true if the SAMRecord matches the filter, otherwise false
      • filterOut

        public boolean filterOut​(SAMRecord first,
                                 SAMRecord second)
        Determines whether a pair of SAMRecord matches this filter
        Specified by:
        filterOut in interface SamRecordFilter
        Parameters:
        first - the first SAMRecord to evaluate
        second - the second SAMRecord to evaluate
        Returns:
        true if the SAMRecords matches the filter, otherwise false