Interface SAMFileWriter

    • Method Detail

      • addAlignment

        void addAlignment​(SAMRecord alignment)
      • setProgressLogger

        void setProgressLogger​(ProgressLoggerInterface progress)
        Sets a ProgressLogger on this writer. This is useful when pulling, for instance, from a SortingCollection.
      • close

        void close()
        Must be called to flush or file will likely be defective.
        Specified by:
        close in interface AutoCloseable
        Specified by:
        close in interface Closeable